ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3dlgA6 - ECOD Domain | ECOD

ECOD/Domains/e3dlgA6

e3dlgA6

UID: 001187001

PDB

Range: A:243-316
PDB: 3DLG chain A(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: REVERSE TRANSCRIPTASE/RIBONUCLEASE H

3D Structure

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Related Domains

Browse other domains in RVT_thumb →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRVT_thumb(4967.1.1.9)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF06817RVT_thumb

Reverse transcriptase thumb domain

External Links

ECOD PDB View: 3DLG RCSB PDB: 3DLG PDBe: 3DLG UniProt: P04585

Downloads

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