ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1tktA8 - ECOD Domain | ECOD

ECOD/Domains/e1tktA8

e1tktA8

UID: 001188235

PDB

Range: A:429-537
PDB: 1TKT chain A(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: Pol polyproteins [Reverse transcriptase], Chain A

3D Structure

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Related Domains

Browse other domains in RNase_H →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRNase_H(2484.1.1.4)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00075RNase_H

RNase H

ClanCL0219RNase_H

External Links

ECOD PDB View: 1TKT RCSB PDB: 1TKT PDBe: 1TKT UniProt: P04585

Downloads

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