ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1rvuB3 - ECOD Domain | ECOD

ECOD/Domains/e1rvuB3

e1rvuB3

UID: 001194073

PDB

Range: B:15-321
PDB: 1RVU chain B(all domains)
UniProt: P07511 (all domains)
Gene: SHMT1

Molecule: Serine hydroxymethyltransferase, cytosolic

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

Pyridoxal phosphatePLP
drugDrugBank DB00114

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 1RVU RCSB PDB: 1RVU PDBe: 1RVU UniProt: P07511

Downloads

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Drug annotations from DrugDomain.