ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vwmA5 - ECOD Domain | ECOD

ECOD/Domains/e3vwmA5

e3vwmA5

UID: 001205051

PDB

Range: A:5-104,A:267-392
PDB: 3VWM chain A(all domains)
UniProt: P07062 (all domains)
Gene: nylB'

Molecule: 6-aminohexanoate-dimer hydrolase

3D Structure

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Related Domains

Browse other domains in Beta-lactamase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyBeta-lactamase(223.3.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, 2-(N-morpholino)ethanesulfonic acid, Sulfate ion)

GlycerinGOL
DrugBank DB09462
2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Pfam Families

PF00144Beta-lactamase

Beta-lactamase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 3VWM RCSB PDB: 3VWM PDBe: 3VWM UniProt: P07062

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.