ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4e0dA10 - ECOD Domain | ECOD

ECOD/Domains/e4e0dA10

e4e0dA10

UID: 001236795

PDB

Range: A:297-468
PDB: 4E0D chain A(all domains)
UniProt: Q5KWC1 (all domains)
Gene: polA

Molecule: DNA polymerase

3D Structure

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Related Domains

Browse other domains in DNA_polI_exo1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyDNA_polI_exo1(2484.1.1.96)

Ligands

in contact, ≤ 4 Å

2'-Deoxycytidine 5'-triphosphateDCP
drugDrugBank DB03258

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Pfam Families

PF22619DNA_polI_exo1

DNA polymerase I, ribonuclease H-like domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4E0D RCSB PDB: 4E0D PDBe: 4E0D UniProt: Q5KWC1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.