ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3u53A2 - ECOD Domain | ECOD

ECOD/Domains/e3u53A2

e3u53A2

UID: 001247713

PDB

Range: A:4-147
PDB: 3U53 chain A(all domains)
UniProt: P50583 (all domains)
Gene: NUDT2

Molecule: Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]

3D Structure

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Related Domains

Browse other domains in NUDIX →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupNudix(221.4)

TT-groupNudix(221.4.1)

FFamilyNUDIX(221.4.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

NUDIX domain

ClanCL0261NUDIX

External Links

ECOD PDB View: 3U53 RCSB PDB: 3U53 PDBe: 3U53 UniProt: P50583

Downloads

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