ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4eq0A2 - ECOD Domain | ECOD

ECOD/Domains/e4eq0A2

e4eq0A2

UID: 001249817

PDB

Range: A:1-99,A:101-199
PDB: 4EQ0 chain A(all domains)
UniProt: P03369 (all domains)
Gene: gag-pol

Molecule: protease, tethered dimer

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345

+ 4 additives (Acetate, Glycerin, Phosphate ion, …)

AcetateACT
DrugBank DB14511

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 4EQ0 RCSB PDB: 4EQ0 PDBe: 4EQ0 UniProt: P03369

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Phosphate ionPO4

DrugBank DB14523

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.