ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3u4mA4 - ECOD Domain | ECOD

ECOD/Domains/e3u4mA4

e3u4mA4

UID: 001252442

PDB

Range: A:1-67,A:160-228
PDB: 3U4M chain A(all domains)
UniProt: P27150 (all domains)
Gene: rplA

Molecule: 50S ribosomal protein L1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ribosomal_L1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupa+b domain in Ribosomal protein L1(898)

HH-groupa+b domain in Ribosomal protein L1(898.1)

TT-groupa+b domain in Ribosomal protein L1(898.1.1)

FFamilyRibosomal_L1(898.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal
Sodium ionNA
metal

Pfam Families

PF00687Ribosomal_L1

Ribosomal protein L1p/L10e family

External Links

ECOD PDB View: 3U4M RCSB PDB: 3U4M PDBe: 3U4M UniProt: P27150

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Malonate Ion, Sulfate ion)

Malonate IonMLI
DrugBank DB02201
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.