ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4c13A4 - ECOD Domain | ECOD

ECOD/Domains/e4c13A4

e4c13A4

UID: 001255283

PDB

Range: A:98-331
PDB: 4C13 chain A(all domains)
UniProt: Q2FZP6 (all domains)
Gene: murE

Molecule: UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-LYSINE LIGASE

3D Structure

Loading viewer...

Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Potassium ionK
metal
Magnesium ionMG

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4C13 RCSB PDB: 4C13 PDBe: 4C13 UniProt: Q2FZP6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Uridine 5'Diphospho N-acetyl muramoyl-L-Alanyl-D-Glutamyl-L-LysineUML

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.