ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dn0A6 - ECOD Domain | ECOD

ECOD/Domains/e4dn0A6

e4dn0A6

UID: 001255994

PDB

Range: A:319-455
PDB: 4DN0 chain A(all domains)
UniProt: Q02PM6 (all domains)

Molecule: Putative uncharacterized protein pelD

3D Structure

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Related Domains

Browse other domains in PelD_GGDEF →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyPelD_GGDEF(304.48.1.27)

Ligands

in contact, ≤ 4 Å

9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)C2E
Sodium ionNA
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

PF16963PelD_GGDEF

PelD GGDEF domain

External Links

ECOD PDB View: 4DN0 RCSB PDB: 4DN0 PDBe: 4DN0 UniProt: Q02PM6

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.