ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qlhB6 - ECOD Domain | ECOD

ECOD/Domains/e3qlhB6

e3qlhB6

UID: 001257228

PDB

Range: B:6-230
PDB: 3QLH chain B(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: reverse transcriptase/ribonuclease H

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

RilpivirineT27
drugDrugBank DB08864within 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer.

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 3QLH RCSB PDB: 3QLH PDBe: 3QLH UniProt: P03366

Downloads

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Drug annotations from DrugDomain.