ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3pkyB2 - ECOD Domain | ECOD

ECOD/Domains/e3pkyB2

e3pkyB2

UID: 001258858

PDB

Range: B:7-70,B:94-292
PDB: 3PKY chain B(all domains)
UniProt: P9WNV2 (all domains)
Gene: ligD

Molecule: Putative DNA ligase-like protein

3D Structure

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Related Domains

Browse other domains in LigD_Prim-Pol →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPrim-pol domain(862)

HH-groupPrim-pol domain(862.1)

TT-groupPrim-pol domain(862.1.1)

FFamilyLigD_Prim-Pol(862.1.1.5)

Ligands

in contact, ≤ 4 Å

Uridine 5'-triphosphateUTP
drugDrugBank DB04005
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21686LigD_Prim-Pol

LigD, primase-polymerase domain

ClanCL0243AEP

External Links

ECOD PDB View: 3PKY RCSB PDB: 3PKY PDBe: 3PKY UniProt: P9WNV2

Downloads

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