ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2y2nA1 - ECOD Domain | ECOD

ECOD/Domains/e2y2nA1

e2y2nA1

UID: 001278444

PDB

Range: A:105-119,A:337-456,A:561-789
PDB: 2Y2N chain A(all domains)
UniProt: Q7CRA4 (all domains)
Gene: pbp1b

Molecule: PENICILLIN-BINDING PROTEIN 1B

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
TRIHYDROXY-[(1S)-1-[[2-(PHENYLMETHYL)PHENYL]CARBONYLAMINO]ETHYL]BORONE07
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 2Y2N RCSB PDB: 2Y2N PDBe: 2Y2N UniProt: Q7CRA4

Downloads

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