ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2pt9B2 - ECOD Domain | ECOD

ECOD/Domains/e2pt9B2

e2pt9B2

UID: 001279102

PDB

Range: B:98-320
PDB: 2PT9 chain B(all domains)
UniProt: Q8II73 (all domains)
Gene: PF3D7_1129000

Molecule: Spermidine synthase

3D Structure

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Related Domains

Browse other domains in Spermine_synth →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilySpermine_synth(2003.1.5.13)

Ligands

in contact, ≤ 4 Å

cis-4-methylcyclohexanamine2MH
5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINES4M

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL

Pfam Families

PF01564Spermine_synth

Spermine/spermidine synthase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2PT9 RCSB PDB: 2PT9 PDBe: 2PT9 UniProt: Q8II73

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.