ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4afkA1 - ECOD Domain | ECOD

ECOD/Domains/e4afkA1

e4afkA1

UID: 001280777

PDB

Range: A:37-490
PDB: 4AFK chain A(all domains)
UniProt: P18895 (all domains)
Gene: algE

Molecule: ALGINATE PRODUCTION PROTEIN ALGE

3D Structure

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Related Domains

Browse other domains in Alginate_exp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupPorins(5084.5)

TT-groupMaltoporin-like(5084.5.2)

FFamilyAlginate_exp(5084.5.2.2)

Ligands

in contact, ≤ 4 Å

2-(2-{2-[2-(2-{2-[2-(2-Ethoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethanol, Polyethyleneglycol Peg400PE5
drugDrugBank DB03556
(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE78M
(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE

Pfam Families

PF13372Alginate_exp

Alginate export

ClanCL0193MBB

External Links

ECOD PDB View: 4AFK RCSB PDB: 4AFK PDBe: 4AFK UniProt: P18895

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ionCA

metal

Sodium ionNA

metal

+ 2 additives (Dodecyldimethylamine N-oxide, Citrate anion)

Dodecyldimethylamine N-oxideLDA
DrugBank DB04147
Citrate anionFLC

Shown in the structure viewer. Drug annotations from DrugDomain.