ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4nzgB1 - ECOD Domain | ECOD

ECOD/Domains/e4nzgB1

e4nzgB1

UID: 001282130

PDB

Range: B:12-104
PDB: 4NZG chain B(all domains)
UniProt: P03355 (all domains)
Gene: gag-pol

Molecule: Integrase p46

3D Structure

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Related Domains

Browse other domains in zf-H2C2, zf-H3C2 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilyzf-H2C2, zf-H3C2(101.1.1.301)

Ligands

in contact, ≤ 4 Å

1,4-DithiothreitolDTT
drugDrugBank DB04447
Zinc ionZN
metal

+ 1 additive (Acetate)

Pfam Families

PF09337zf-H2C2

H2C2 zinc finger

ClanCL0361C2H2-zf

PF16721zf-H3C2

Zinc-finger like, probable DNA-binding

ClanCL0361C2H2-zf

External Links

ECOD PDB View: 4NZG RCSB PDB: 4NZG PDBe: 4NZG UniProt: P03355

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT

DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.