ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cqkH1 - ECOD Domain | ECOD

ECOD/Domains/e4cqkH1

e4cqkH1

UID: 001285521

PDB

Range: H:1-47
PDB: 4CQK chain H(all domains)
UniProt: Q8GTM0 (all domains)
Gene: D1

Molecule: FLOWER-SPECIFIC DEFENSIN

3D Structure

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Related Domains

Browse other domains in Gamma-thionin →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupomega toxin-like(387)

HH-groupomega toxin-related(387.1)

TT-groupScorpion toxin-like(387.1.5)

FFamilyGamma-thionin(387.1.5.1)

Ligands

in contact, ≤ 4 Å

(4R)-2-METHYLPENTANE-2,4-DIOLMRD
[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoatePIO

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

PF00304Gamma-thionin

Gamma-thionin family

ClanCL0054Knottin_1

External Links

ECOD PDB View: 4CQK RCSB PDB: 4CQK PDBe: 4CQK UniProt: Q8GTM0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.