ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4oqdD1 - ECOD Domain | ECOD

ECOD/Domains/e4oqdD1

e4oqdD1

UID: 001286639

PDB

Range: D:10-249
PDB: 4OQD chain D(all domains)
UniProt: P95748 (all domains)
Gene: tylM1

Molecule: dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_23, Methyltransf_25 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_23, Methyltransf_25(2003.1.5.151)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
TDP-3,6-dideoxy-3-N,N-dimethylglucoseQDM

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13489Methyltransf_23

Methyltransferase domain

ClanCL0063NADP_Rossmann

PF13649Methyltransf_25

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4OQD RCSB PDB: 4OQD PDBe: 4OQD UniProt: P95748

Downloads

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