ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4oioD2 - ECOD Domain | ECOD

ECOD/Domains/e4oioD2

e4oioD2

UID: 001289306

PDB

Range: D:610-653,D:697-777
PDB: 4OIO chain D(all domains)
UniProt: Q8RQE8 (all domains)
Gene: rpoC

Molecule: DNA-directed RNA polymerase subunit beta'

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb1_2(1.1.2.2)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine2TM
Magnesium ionMG

Pfam Families

PF00623RNA_pol_Rpb1_2

RNA polymerase Rpb1, domain 2

External Links

ECOD PDB View: 4OIO RCSB PDB: 4OIO PDBe: 4OIO UniProt: Q8RQE8

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.