ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pbyA1 - ECOD Domain | ECOD

ECOD/Domains/e4pbyA1

e4pbyA1

UID: 001297227

PDB

Range: A:3-88,A:114-411
PDB: 4PBY chain A(all domains)
UniProt: Q09028 (all domains)
Gene: RBBP4

Molecule: Histone-binding protein RBBP4

3D Structure

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Related Domains

Browse other domains in WD40, CAF1C_H4-bd, Beta-prop_EIPR1 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyWD40, CAF1C_H4-bd, Beta-prop_EIPR1(5.1.4.292)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Isopropyl alcohol)

Isopropyl alcoholIPA
DrugBank DB02325

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

WD domain, G-beta repeat

ClanCL0186Beta_propeller

PF12265CAF1C_H4-bd

Histone-binding protein RBBP4 or subunit C of CAF1 complex

ClanCL0186Beta_propeller

PF23609Beta-prop_EIPR1

EIPR1 beta-propeller

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 4PBY RCSB PDB: 4PBY PDBe: 4PBY UniProt: Q09028

Downloads

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