ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1nkkA1 - ECOD Domain | ECOD

ECOD/Domains/e1nkkA1

e1nkkA1

UID: 001308587

PDB

Range: A:4-256
PDB: 1NKK chain A(all domains)
UniProt: P16753 (all domains)
Gene: UL80

Molecule: Capsid scaffolding protein (Protease precursor) (pPR) [Cleaved into: Assemblin (EC 3.4.21.97) (Protease) (Pr); Assembly protein (AP) (Capsid assembly protein)]

3D Structure

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Related Domains

Browse other domains in Peptidase_S21 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupHerpes virus serine proteinase, assemblin(50)

HH-groupHerpes virus serine proteinase, assemblin(50.1)

TT-groupHerpes virus serine proteinase, assemblin(50.1.1)

FFamilyPeptidase_S21(50.1.1.1)

Pfam Families

PF00716Peptidase_S21

Assemblin (Peptidase family S21)

ClanCL0201Peptidase_SH

External Links

ECOD PDB View: 1NKK RCSB PDB: 1NKK PDBe: 1NKK UniProt: P16753

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