ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3sq5D1 - ECOD Domain | ECOD

ECOD/Domains/e3sq5D1

e3sq5D1

UID: 001308989

PDB

Range: D:79-286
PDB: 3SQ5 chain D(all domains)
UniProt: P38319 (all domains)
Gene: TDP1

Molecule: Tyrosyl-DNA phosphodiesterase 1 (Tyr-DNA phosphodiesterase 1) (EC 3.1.4.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Tyr-DNA_phospho →

Classification

AArchitecturea+b three layers(a.12)

XX-groupPhospholipase D/nuclease(300)

HH-groupPhospholipase D/nuclease(300.1)

TT-groupPhospholipase D/nuclease(300.1.1)

FFamilyTyr-DNA_phospho(300.1.1.3)

Pfam Families

PF06087Tyr-DNA_phospho

Tyrosyl-DNA phosphodiesterase

ClanCL0479PLD

External Links

ECOD PDB View: 3SQ5 RCSB PDB: 3SQ5 PDBe: 3SQ5 UniProt: P38319

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure