ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pd5A1 - ECOD Domain | ECOD

ECOD/Domains/e4pd5A1

e4pd5A1

UID: 001322922

PDB

Range: A:3-416
PDB: 4PD5 chain A(all domains)
UniProt: Q9KPL5 (all domains)
Gene: VC_2352

Molecule: NupC family protein

3D Structure

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Related Domains

Browse other domains in Nucleos_tra2_N,Nucleos_tra2_C,Gate →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupConcentrative nucleoside transporter(3415)

HH-groupConcentrative nucleoside transporter(3415.1)

TT-groupConcentrative nucleoside transporter(3415.1.1)

FFamilyNucleos_tra2_N,Nucleos_tra2_C,Gate(3415.1.1.1)

Ligands

in contact, ≤ 4 Å

GemcitabineGEO
drugDrugBank DB00441
Decyl-beta-d-maltopyranosideDMU
Sodium ionNA
metal

Pfam Families

PF01773Nucleos_tra2_N

Na+ dependent nucleoside transporter N-terminus

PF07662Nucleos_tra2_C

Na+ dependent nucleoside transporter C-terminus

Nucleoside recognition

External Links

ECOD PDB View: 4PD5 RCSB PDB: 4PD5 PDBe: 4PD5 UniProt: Q9KPL5

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.