ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4u5wA1 - ECOD Domain | ECOD

ECOD/Domains/e4u5wA1

e4u5wA1

UID: 001324196

PDB

Range: A:72-161,A:183-208
PDB: 4U5W chain A(all domains)
UniProt: P03407 (all domains)
Gene: nef

Molecule: Protein Nef

3D Structure

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Related Domains

Browse other domains in F-protein →

Classification

AArchitecturea+b three layers(a.12)

XX-groupRegulatory factor Nef(836)

HH-groupRegulatory factor Nef(836.1)

TT-groupRegulatory factor Nef(836.1.1)

FFamilyF-protein(836.1.1.1)

Ligands

in contact, ≤ 4 Å

Iodide ionIOD

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00469F-protein

Negative factor, (F-Protein) or Nef

External Links

ECOD PDB View: 4U5W RCSB PDB: 4U5W PDBe: 4U5W UniProt: P03407

Downloads

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