ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4q85E3 - ECOD Domain | ECOD

ECOD/Domains/e4q85E3

e4q85E3

UID: 001325074

PDB

Range: E:104-213,E:347-406
PDB: 4Q85 chain E(all domains)
UniProt: P75838 (all domains)
Gene: ycaO

Molecule: Ribosomal protein S12 methylthiotransferase accessory factor YcaO

3D Structure

Loading viewer...

Related Domains

Browse other domains in YcaO →

Classification

AArchitecturea+b two layers(a.11)

XX-groupdsRBD-like(330)

HH-groupHeterocyclase TruD C-terminal domain(330.10)

TT-groupHeterocyclase TruD C-terminal domain(330.10.1)

FFamilyYcaO(330.10.1.1)

Pfam Families

YcaO cyclodehydratase, ATP-ad Mg2+-binding

External Links

ECOD PDB View: 4Q85 RCSB PDB: 4Q85 PDBe: 4Q85 UniProt: P75838

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure