ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3gdnA2 - ECOD Domain | ECOD

ECOD/Domains/e3gdnA2

e3gdnA2

UID: 000134135

PDB

Range: A:1-293,A:464-521
PDB: 3GDN chain A(all domains)
UniProt: Q945K2 (all domains)
Gene: MDL2

Molecule: R-oxynitrile lyase isoenzyme 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in GMC_oxred_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyGMC_oxred_N(2003.1.2.2)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
N-AcetylglucosamineNAG
drugDrugBank DB00141

Pfam Families

PF00732GMC_oxred_N

GMC oxidoreductase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3GDN RCSB PDB: 3GDN PDBe: 3GDN UniProt: Q945K2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

benzaldehyde

(2R)-hydroxy(phenyl)ethanenitrileMXN

Shown in the structure viewer. Drug annotations from DrugDomain.