ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mb5A1 - ECOD Domain | ECOD

ECOD/Domains/e3mb5A1

e3mb5A1

UID: 000139161

PDB

Range: A:62-255
PDB: 3MB5 chain A(all domains)
UniProt: Q9V1J7 (all domains)
Gene: trmI

Molecule: SAM-dependent methyltransferase

3D Structure

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Related Domains

Browse other domains in GCD14 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyGCD14(2003.1.5.69)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 3 additives (Acetate, 1,2-ETHANEDIOL, Sulfate ion)

AcetateACT
DrugBank DB14511

Pfam Families

tRNA methyltransferase complex GCD14 subunit

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3MB5 RCSB PDB: 3MB5 PDBe: 3MB5 UniProt: Q9V1J7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.