ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3me4A3 - ECOD Domain | ECOD

ECOD/Domains/e3me4A3

e3me4A3

UID: 001393903

PDB

Range: A:131-201
PDB: 3ME4 chain A(all domains)
UniProt: O35305 (all domains)
Gene: Tnfrsf11a

Molecule: Tumor necrosis factor receptor superfamily member 11A

3D Structure

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Related Domains

Browse other domains in TNFR_c6 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupEGF-like(389)

HH-groupEGF-related(389.1)

TT-groupTNF receptor-like(389.1.3)

FFamilyTNFR_c6(389.1.3.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
Chloride ionCL
within 5 Å only

+ 3 additives (Acetate, Glycerin, Sulfate ion)

AcetateACT

Pfam Families

PF00020TNFR_c6

TNFR/NGFR cysteine-rich region

ClanCL0607TNF_receptor

External Links

ECOD PDB View: 3ME4 RCSB PDB: 3ME4 PDBe: 3ME4 UniProt: O35305

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

GlycerinGOL

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.