ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rbmA1 - ECOD Domain | ECOD

ECOD/Domains/e4rbmA1

e4rbmA1

UID: 001397998

PDB

Range: A:372-599
PDB: 4RBM chain A(all domains)
UniProt: Q51817 (all domains)
Gene: kgp

Molecule: Lys-gingipain W83

3D Structure

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Related Domains

Browse other domains in Peptidase_C25 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupCaspase-like(7575)

HH-groupCaspase-like(7575.1)

TT-groupCaspase-like(7575.1.1)

FFamilyPeptidase_C25(7575.1.1.2)

Ligands

in contact, ≤ 4 Å

HistidineHIS
drugDrugBank DB00117
Azide ionAZI
Calcium ionCA
metal

Pfam Families

PF01364Peptidase_C25

Peptidase family C25

ClanCL0093Peptidase_CD

External Links

ECOD PDB View: 4RBM RCSB PDB: 4RBM PDBe: 4RBM UniProt: Q51817

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(3S)-3,7-diaminoheptan-2-oneCKC

Sodium ionNA

metal

NICKEL (II) IONNI

metal

+ 2 additives (Acetate, Glycerin)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.