ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4k6wB1 - ECOD Domain | ECOD

ECOD/Domains/e4k6wB1

e4k6wB1

UID: 001401668

PDB

Range: B:181-365
PDB: 4K6W chain B(all domains)
UniProt: Q64823 (all domains)
Gene: L5

Molecule: Fiber protein

3D Structure

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Related Domains

Browse other domains in Adeno_knob →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupDomain in virus attachment proteins(5092)

HH-groupDomain in virus attachment proteins(5092.1)

TT-groupDomain in virus attachment proteins(5092.1.1)

FFamilyAdeno_knob(5092.1.1.1)

Ligands

in contact, ≤ 4 Å

3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid18D
Zinc ionZN
metal

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

Acetate

Pfam Families

PF00541Adeno_knob

Adenoviral fibre protein (knob domain)

ClanCL0326Reo_sigma

External Links

ECOD PDB View: 4K6W RCSB PDB: 4K6W PDBe: 4K6W UniProt: Q64823

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.