ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3a5yA1 - ECOD Domain | ECOD

ECOD/Domains/e3a5yA1

e3a5yA1

UID: 000140344

PDB

Range: A:5-164,A:189-325
PDB: 3A5Y chain A(all domains)
UniProt: P0A8N7 (all domains)
Gene: epmA

Molecule: Elongation factor P--(R)-beta-lysine ligase (EF-P--(R)-beta-lysine ligase) (EC 6.3.2.-) (EF-P post-translational modification enzyme A) (EF-P-lysine lysyltransferase) (GX)

3D Structure

Loading viewer...

Related Domains

Browse other domains in tRNA-synt_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2(314.1.1.1)

Pfam Families

PF00152tRNA-synt_2

tRNA synthetases class II (D, K and N)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 3A5Y RCSB PDB: 3A5Y PDBe: 3A5Y UniProt: P0A8N7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure