ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4q4y11 - ECOD Domain | ECOD

ECOD/Domains/e4q4y11

e4q4y11

UID: 001406092

PDB

Range: 1:25-305
PDB: 4Q4Y chain 1(all domains)
UniProt: V9VEF3 (all domains)

Molecule: Coxsackievirus capsid protein VP1

3D Structure

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Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

Hexane-1,6-DiolHEZ
drugDrugBank DB02210
N-acetyl-alpha-neuraminic acidSIA
drugDrugBank DB03721

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 4Q4Y RCSB PDB: 4Q4Y PDBe: 4Q4Y UniProt: V9VEF3

Downloads

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Calcium ion

metal

Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.