ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4v2vB1 - ECOD Domain | ECOD

ECOD/Domains/e4v2vB1

e4v2vB1

UID: 001406340

PDB

Range: B:7-354
PDB: 4V2V chain B(all domains)
UniProt: O75164 (all domains)
Gene: KDM4A

Molecule: LYSINE-SPECIFIC DEMETHYLASE 4A

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal
N-oxalylglycineOGA
Zinc ionZN

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

ECOD PDB View: 4V2V RCSB PDB: 4V2V PDBe: 4V2V UniProt: O75164

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.