ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pvoB1 - ECOD Domain | ECOD

ECOD/Domains/e4pvoB1

e4pvoB1

UID: 001411584

PDB

Range: B:30-298
PDB: 4PVO chain B(all domains)
UniProt: Q9K2N0 (all domains)
Gene: blaVIM-2

Molecule: Beta-lactamase class B VIM-2

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

(2Z)-2-sulfanyl-3-(2,3,6-trichlorophenyl)prop-2-enoic acidS3C
N-(4-methylpiperazin-1-yl)-2-[(5Z)-4-oxo-2-thioxo-5-(2,3,6-trichlorobenzylidene)-1,3-thiazolidin-3-yl]acetamideSVB
Zinc ionZN

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 4PVO RCSB PDB: 4PVO PDBe: 4PVO UniProt: Q9K2N0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Formic acid)

Formic acidFMT
DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.