ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ub6o1 - ECOD Domain | ECOD

ECOD/Domains/e4ub6o1

e4ub6o1

UID: 001412810

PDB

Range: o:4-246
PDB: 4UB6 chain o(all domains)
UniProt: D0VWR2 (all domains)
Gene: psbO

Molecule: Photosystem II manganese-stabilizing polypeptide

3D Structure

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Related Domains

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Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupOMPA-like(5084.1)

TT-groupOMPA-like(5084.1.1)

FFamilyMSP(5084.1.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
heptyl 1-thio-beta-D-glucopyranosideHTG

+ 2 additives (Glycerin, Dodecyl-beta-d-maltoside)

GlycerinGOL

Pfam Families

Manganese-stabilising protein / photosystem II polypeptide

ClanCL0193MBB

External Links

ECOD PDB View: 4UB6 RCSB PDB: 4UB6 PDBe: 4UB6 UniProt: D0VWR2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Dodecyl-beta-d-maltosideLMT

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.