ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ub8c1 - ECOD Domain | ECOD

ECOD/Domains/e4ub8c1

e4ub8c1

UID: 001412831

PDB

Range: c:19-473
PDB: 4UB8 chain c(all domains)
UniProt: D0VWR7 (all domains)
Gene: psbC

Molecule: Photosystem II 44 kDa reaction center protein

3D Structure

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Related Domains

Browse other domains in PSII →

Classification

AArchitecturealpha bundles(a.7)

XX-groupPhotosystem II antenna protein-like(5075)

HH-groupPhotosystem II antenna protein-like(5075.1)

TT-groupPhotosystem II antenna protein-like(5075.1.1)

FFamilyPSII(5075.1.1.2)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
Digalactosyl Diacyl Glycerol (Dgdg)

Pfam Families

Photosystem II protein

External Links

ECOD PDB View: 4UB8 RCSB PDB: 4UB8 PDBe: 4UB8 UniProt: D0VWR7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03426

Heptyl 1-ThiohexopyranosideHTG

drugDrugBank DB04450

1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG

drugDrugBank DB02043

Ferroheme CHEC

drugDrugBank DB03317within 5 Å only

Calcium ionCA

metal

Chloride ionCL

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

CA-MN4-O5 CLUSTEROEX

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Unknown ligandUNL

+ 2 additives (Glycerin, Dodecyl-beta-d-maltoside)

GlycerinGOL
DrugBank DB09462
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.