ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ub8V1 - ECOD Domain | ECOD

ECOD/Domains/e4ub8V1

e4ub8V1

UID: 001412856

PDB

Range: V:1-137
PDB: 4UB8 chain V(all domains)
UniProt: P0A387 (all domains)
Gene: psbV

Molecule: Cytochrome c-550

3D Structure

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Related Domains

Browse other domains in Cytochrom_C550 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCytochrome c-like(107)

HH-groupCytochrome c(107.1)

TT-groupCytochrome c(107.1.1)

FFamilyCytochrom_C550(107.1.1.10)

Ligands

in contact, ≤ 4 Å

Digalactosyl Diacyl Glycerol (Dgdg)DGD
drugDrugBank DB03426
Heptyl 1-ThiohexopyranosideHTG
drugDrugBank DB04450

Pfam Families

PF14495Cytochrom_C550

Cytochrome c-550 domain

ClanCL0318Cytochrome-c

External Links

ECOD PDB View: 4UB8 RCSB PDB: 4UB8 PDBe: 4UB8 UniProt: P0A387

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Ferroheme CHEC

drugDrugBank DB03317within 5 Å only

Calcium ionCA

metalwithin 5 Å only

Chloride ionCL

within 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.