ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ub8R1 - ECOD Domain | ECOD

ECOD/Domains/e4ub8R1

e4ub8R1

UID: 001412864

PDB

Range: R:2-35
PDB: 4UB8 chain R(all domains)
UniProt: P0DM37 (all domains)
Gene: psbY

Molecule: Photosystem II protein Y

3D Structure

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Related Domains

Browse other domains in PsbY →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II protein Y, psbY(6106)

HH-groupPhotosystem II protein Y, psbY(6106.1)

TT-groupPhotosystem II protein Y, psbY(6106.1.1)

FFamilyPsbY(6106.1.1.1)

Ligands

in contact, ≤ 4 Å

Digalactosyl Diacyl Glycerol (Dgdg)DGD
drugDrugBank DB03426
FerrohemeHEM
drugDrugBank DB18267

Pfam Families

Photosystem II protein Y (PsbY)

External Links

ECOD PDB View: 4UB8 RCSB PDB: 4UB8 PDBe: 4UB8 UniProt: P0DM37

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL

Shown in the structure viewer. Drug annotations from DrugDomain.