ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4edkA2 - ECOD Domain | ECOD

ECOD/Domains/e4edkA2

e4edkA2

UID: 001413864

PDB

Range: A:108-240
PDB: 4EDK chain A(all domains)
UniProt: O05338 (all domains)
Gene: dnaG

Molecule: DNA primase

3D Structure

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Related Domains

Browse other domains in DNAG_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupN-terminal a+b domain in DNA primase core(4023)

HH-groupN-terminal a+b domain in DNA primase core(4023.1)

TT-groupN-terminal a+b domain in DNA primase core(4023.1.1)

FFamilyDNAG_N(4023.1.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
BenzamidineBEN
MANGANESE (II) IONMN

Pfam Families

DNA primase catalytic core, N-terminal domain

ClanCL0748DNA_prim_N

External Links

ECOD PDB View: 4EDK RCSB PDB: 4EDK PDBe: 4EDK UniProt: O05338

Downloads

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metal

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.