ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4p8mA1 - ECOD Domain | ECOD

ECOD/Domains/e4p8mA1

e4p8mA1

UID: 001423413

PDB

Range: A:195-270,A:290-461
PDB: 4P8M chain A(all domains)
UniProt: P9WJF0 (all domains)
Gene: dprE1

Molecule: Probable decaprenylphosphoryl-beta-D-ribose oxidase

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFAD-linked oxidases, C-terminal domain(304.6)

TT-groupFAD-linked oxidases, C-terminal domain(304.6.1)

FFamilyALO(304.6.1.2)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
(2R)-2-{[(2R)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol2J3
3-[(4-ethoxybenzyl)amino]-6-(trifluoromethyl)quinoxaline-2-carboxylic acid

Pfam Families

D-arabinono-1,4-lactone oxidase

ClanCL0277FAD-oxidase_C

External Links

ECOD PDB View: 4P8M RCSB PDB: 4P8M PDBe: 4P8M UniProt: P9WJF0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.