ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3s5tA1 - ECOD Domain | ECOD

ECOD/Domains/e3s5tA1

e3s5tA1

UID: 000146371

RepresentativePDB

Range: A:28-284
PDB: 3S5T chain A(all domains)
UniProt: Q5LDM9 (all domains)
Gene: BF9343_1998

Molecule: DUF3298 family protein

3D Structure

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Related Domains

Browse other domains in DUF3298,PdaC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupPeptidoglycan deacetylase N-terminal noncatalytic region(4321)

HH-groupPeptidoglycan deacetylase N-terminal noncatalytic region(4321.1)

TT-groupPeptidoglycan deacetylase N-terminal noncatalytic region(4321.1.1)

FFamilyDUF3298,PdaC(4321.1.1.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Phosphate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Phosphate ionPO4

Pfam Families

PF11738DUF3298

Protein of unknown function (DUF3298)

Deacetylase PdaC

External Links

ECOD PDB View: 3S5T RCSB PDB: 3S5T PDBe: 3S5T UniProt: Q5LDM9

Downloads

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DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.