ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pfnB1 - ECOD Domain | ECOD

ECOD/Domains/e4pfnB1

e4pfnB1

UID: 001481136

PDB

Range: B:1-290
PDB: 4PFN chain B(all domains)
UniProt: A5K8L9 (all domains)
Gene: PVX_100730

Molecule: Serine hydroxymethyltransferase, putative

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

Pyridoxal phosphatePLP
drugDrugBank DB00114
SerineSER
drugDrugBank DB00133
Chloride ion

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 4PFN RCSB PDB: 4PFN PDBe: 4PFN UniProt: A5K8L9

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.