ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3tkaA1 - ECOD Domain | ECOD

ECOD/Domains/e3tkaA1

e3tkaA1

UID: 000150331

PDB

Range: A:113-212
PDB: 3TKA chain A(all domains)
UniProt: P60390 (all domains)
Gene: rsmH

Molecule: Ribosomal RNA small subunit methyltransferase H

3D Structure

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Related Domains

Browse other domains in Methyltransf_5 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyMethyltransf_5(102.1.1.6)

Ligands

in contact, ≤ 4 Å

CytidineCTN
drugDrugBank DB02097
AdemetionineSAM
drugDrugBank DB00118

+ 2 additives (Tetraethylene glycol, Sulfate ion)

Pfam Families

PF01795Methyltransf_5

MraW methylase family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3TKA RCSB PDB: 3TKA PDBe: 3TKA UniProt: P60390

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Tetraethylene glycolPG4
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.