ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3g5rA1 - ECOD Domain | ECOD

ECOD/Domains/e3g5rA1

e3g5rA1

UID: 001509311

PDB

Range: A:1-160,A:306-436
PDB: 3G5R chain A(all domains)
UniProt: Q5SID2 (all domains)
Gene: trmFO

Molecule: Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO

3D Structure

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Related Domains

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Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyGIDA(2003.1.2.10)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
(6S)-5,6,7,8-tetrahydrofolic acidTHG
drugDrugBank DB02031

Pfam Families

Glucose inhibited division protein A

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3G5R RCSB PDB: 3G5R PDBe: 3G5R UniProt: Q5SID2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ionCA

metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.