ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1nikB5 - ECOD Domain | ECOD

ECOD/Domains/e1nikB5

e1nikB5

UID: 001510415

PDB

Range: B:542-630
PDB: 1NIK chain B(all domains)
UniProt: P08518 (all domains)
Gene: RPB2

Molecule: DNA-directed RNA polymerase II subunit RPB2 (RNA polymerase II subunit 2) (EC 2.7.7.6) (B150) (DNA-directed RNA polymerase II 140 kDa polypeptide)

3D Structure

Loading viewer...

Related Domains

Browse other domains in RNA_pol_Rpb2_4 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupinserted a+b domain in yeast RNA polymerase beta subunit(4961)

HH-groupinserted a+b domain in yeast RNA polymerase beta subunit(4961.1)

TT-groupinserted a+b domain in yeast RNA polymerase beta subunit(4961.1.1)

FFamilyRNA_pol_Rpb2_4(4961.1.1.1)

Pfam Families

PF04566RNA_pol_Rpb2_4

RNA polymerase Rpb2, domain 4

External Links

ECOD PDB View: 1NIK RCSB PDB: 1NIK PDBe: 1NIK UniProt: P08518

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure