ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3fsxD1 - ECOD Domain | ECOD

ECOD/Domains/e3fsxD1

e3fsxD1

UID: 001516625

PDB

Range: D:149-310
PDB: 3FSX chain D(all domains)
UniProt: P9WP21 (all domains)
Gene: dapD

Molecule: Tetrahydrodipicolinate N-succinyltransferase

3D Structure

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Related Domains

Browse other domains in Hexapep_2 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded left-handed beta-helix(208)

HH-groupTrimeric LpxA-like enzymes(208.1)

TT-groupTrimeric LpxA-like enzymes(208.1.1)

FFamilyHexapep_2(208.1.1.6)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Sodium ionNA
metal

+ 2 additives (Acetic acid, (4r)-2-Methylpentane-2,4-Diol)

Acetic acidACY

Pfam Families

PF14602Hexapep_2

Hexapeptide repeat of succinyl-transferase

ClanCL0536HEXAPEP

External Links

ECOD PDB View: 3FSX RCSB PDB: 3FSX PDBe: 3FSX UniProt: P9WP21

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03166

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.