ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pe5B3 - ECOD Domain | ECOD

ECOD/Domains/e4pe5B3

e4pe5B3

UID: 001518868

RepresentativePDB

Range: B:395-528,B:762-802
PDB: 4PE5 chain B(all domains)
UniProt: Q00960 (all domains)
Gene: Grin2b

Molecule: Glutamate receptor ionotropic, NMDA 2B

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

Glutamic acidGLU
drugDrugBank DB00142

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 4PE5 RCSB PDB: 4PE5 PDBe: 4PE5 UniProt: Q00960

Downloads

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