ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4k3fA1 - ECOD Domain | ECOD

ECOD/Domains/e4k3fA1

e4k3fA1

UID: 001521248

PDB

Range: A:0-102,A:217-260
PDB: 4K3F chain A(all domains)
UniProt: Q9HT68 (all domains)
Gene: PA5505

Molecule: Probable TonB-dependent receptor

3D Structure

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Related Domains

Browse other domains in Lipoprotein_9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLipoprotein_9(7523.1.1.13)

Ligands

in contact, ≤ 4 Å

SelenomethionineMSE
drugDrugBank DB11142
Chloride ionCL

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

PF03180Lipoprotein_9

NlpA lipoprotein

ClanCL0177PBP

External Links

ECOD PDB View: 4K3F RCSB PDB: 4K3F PDBe: 4K3F UniProt: Q9HT68

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.