ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3o9pA4 - ECOD Domain | ECOD

ECOD/Domains/e3o9pA4

e3o9pA4

UID: 001521974

PDB

Range: A:7-45,A:166-267,A:484-515
PDB: 3O9P chain A(all domains)
UniProt: P77348 (all domains)
Gene: mppA

Molecule: Periplasmic murein peptide-binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

L-ala-gamma-d-glu-meso-diaminopimelic acidMHI
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 3O9P RCSB PDB: 3O9P PDBe: 3O9P UniProt: P77348

Downloads

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