ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1rkmA1 - ECOD Domain | ECOD

ECOD/Domains/e1rkmA1

e1rkmA1

UID: 001522466

PDB

Range: A:1-45,A:166-269,A:486-517
PDB: 1RKM chain A(all domains)
UniProt: P06202 (all domains)
Gene: oppA

Molecule: Periplasmic oligopeptide-binding protein OppA

3D Structure

Loading viewer...

Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 1RKM RCSB PDB: 1RKM PDBe: 1RKM UniProt: P06202

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure